{
  "@context": "https://w3id.org/ro/crate/1.2/context",
  "@graph": [
    {
      "@id": "ro-crate-metadata.json",
      "@type": "CreativeWork",
      "about": { "@id": "./" },
      "conformsTo": { "@id": "https://w3id.org/ro/crate/1.2" },
      "dateCreated": "2026-09-08T21:00:11Z",
      "sdPublisher": { "@id": "#assay-development" }
    },
    {
      "@id": "./",
      "@type": "Dataset",
      "name": "2026-09-08-assay-01",
      "description": "Flow cytometry acquisition for ASSAY-1234, Assay Development, Flow Cytometer 1.",
      "datePublished": "2026-09-08",
      "license": { "@id": "https://example.org/legal/internal-research-use/1.0" },
      "copyrightHolder": { "@id": "https://example.org/org/example-institute" },
      "copyrightYear": "2026",
      "conditionsOfAccess": "Internal use only. Access governed by the owning group.",
      "isAccessibleForFree": false,
      "conformsTo": [
        { "@id": "https://w3id.org/quilt/ro-crate/0.2" },
        { "@id": "https://w3id.org/ro/wfrun/process/0.6" }
      ],
      "identifier": { "@id": "#quilt-package-name" },
      "creator": { "@id": "https://orcid.org/0000-0002-1825-0097" },
      "producer": { "@id": "#assay-development" },
      "subjectOf": { "@id": "https://eln.example.org/entries/etr_AbC123" },
      "mentions": { "@id": "urn:uuid:9f1c4e2a-5b73-4a1e-8c0d-2e7f6a3b9d41" },
      "keywords": "flow cytometry, assay development, ASSAY-1234",
      "hasPart": [{ "@id": "01-Well-A1.fcs" }]
    },

    {
      "@id": "https://w3id.org/quilt/ro-crate/0.2",
      "@type": ["CreativeWork", "Profile"],
      "name": "Quilt RO-Crate profile",
      "version": "0.2.0"
    },
    {
      "@id": "https://w3id.org/ro/wfrun/process/0.6",
      "@type": ["CreativeWork", "Profile"],
      "name": "Process Run Crate",
      "version": "0.6"
    },

    {
      "@id": "#quilt-package-name",
      "@type": "PropertyValue",
      "propertyID": "https://w3id.org/quilt/ro-crate#packageName",
      "name": "Quilt package name",
      "value": "assay-dev/2026-09-08-assay-01"
    },

    {
      "@id": "https://example.org/legal/internal-research-use/1.0",
      "@type": "CreativeWork",
      "name": "Example Institute internal research use v1.0",
      "description": "Proprietary and confidential. All rights reserved by Example Institute. Internal research use only; no redistribution or publication without written authorization.",
      "sameAs": "http://rightsstatements.org/vocab/InC/1.0/"
    },
    {
      "@id": "https://example.org/org/example-institute",
      "@type": "Organization",
      "name": "Example Institute"
    },

    {
      "@id": "https://orcid.org/0000-0002-1825-0097",
      "@type": "Person",
      "name": "Jane Doe",
      "alternateName": "jdoe",
      "affiliation": { "@id": "#assay-development" }
    },

    {
      "@id": "#assay-development",
      "@type": "Organization",
      "name": "Assay Development",
      "url": "https://example.org/org/assay-development",
      "parentOrganization": { "@id": "#laboratory-operations" },
      "owns": { "@id": "https://example.org/instruments/INST-000123" }
    },
    {
      "@id": "#laboratory-operations",
      "@type": "Organization",
      "name": "Laboratory Operations"
    },

    {
      "@id": "https://eln.example.org/entries/etr_AbC123",
      "@type": "CreativeWork",
      "additionalType": { "@id": "https://w3id.org/quilt/ro-crate#ELNEntry" },
      "name": "ASSAY-1234",
      "identifier": "etr_AbC123",
      "url": "https://eln.example.org/entries/etr_AbC123",
      "provider": { "@id": "#eln-vendor" }
    },
    {
      "@id": "#eln-vendor",
      "@type": "SoftwareApplication",
      "name": "Example ELN",
      "url": "https://eln.example.org/"
    },

    {
      "@id": "https://example.org/instruments/INST-000123",
      "@type": "IndividualProduct",
      "additionalType": { "@id": "http://purl.obolibrary.org/obo/OBI_0400044" },
      "name": "Flow Cytometer 1",
      "identifier": "INST-000123",
      "model": "Example FC-5000",
      "manufacturer": { "@id": "#instrument-vendor" }
    },
    {
      "@id": "#instrument-vendor",
      "@type": "Organization",
      "name": "Example Instruments Inc."
    },
    {
      "@id": "http://purl.obolibrary.org/obo/OBI_0400044",
      "@type": "DefinedTerm",
      "name": "flow cytometer",
      "inDefinedTermSet": { "@id": "http://purl.obolibrary.org/obo/obi.owl" }
    },
    {
      "@id": "http://purl.obolibrary.org/obo/obi.owl",
      "@type": "DefinedTermSet",
      "name": "Ontology for Biomedical Investigations (OBI)",
      "url": "https://obofoundry.org/ontology/obi.html"
    },

    {
      "@id": "urn:uuid:9f1c4e2a-5b73-4a1e-8c0d-2e7f6a3b9d41",
      "@type": "CreateAction",
      "name": "Flow cytometry acquisition, plate 01",
      "endTime": "2026-09-08T20:57:29Z",
      "instrument": { "@id": "https://example.org/instruments/INST-000123" },
      "agent": { "@id": "https://orcid.org/0000-0002-1825-0097" },
      "result": { "@id": "01-Well-A1.fcs" }
    },

    {
      "@id": "01-Well-A1.fcs",
      "@type": "File",
      "name": "01-Well-A1.fcs",
      "encodingFormat": "application/vnd.isac.fcs",
      "contentSize": "2405376",
      "sha256": "f3278e796c687371cc63a600b6f12ea32167067fed3ef98099d0c1aad2426531",
      "dateCreated": "2026-09-08T20:57:29Z",
      "dateModified": "2026-09-08T20:57:29Z",
      "variableMeasured": { "@id": "#well-a1" }
    },
    {
      "@id": "#well-a1",
      "@type": "PropertyValue",
      "propertyID": "https://example.org/terms#wellPosition",
      "name": "Well position",
      "value": "A1"
    }
  ]
}